PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000117G1210
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family M-type_MADS
Protein Properties Length: 152aa    MW: 17036.1 Da    PI: 6.7253
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000117G1210genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.46.8e-273382251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+ + rqv fskRr g++KKA+ELSvLC+aeva+++fs+ g+lye++s
  PH01000117G1210 33 RIEDRTSRQVRFSKRRSGLFKKAYELSVLCEAEVALVVFSPAGRLYEFAS 82
                     8***********************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.7E-342483IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.2542484IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-262646IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-2727101IPR002100Transcription factor, MADS-box
CDDcd002651.08E-322894No hitNo description
PfamPF003193.2E-263380IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-264661IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-266182IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MEGEEVGRRV QQAAAGEEGE GAMMKQVKVE LRRIEDRTSR QVRFSKRRSG LFKKAYELSV  60
LCEAEVALVV FSPAGRLYEF ASSNSSIEKN FGRYWDIPNT TNDLNIEARD SRVDCNIQAK  120
QAELGLGLWS NGTRLRSKSL DYATEDAYVM S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-172484161Myocyte-specific enhancer factor 2B
1tqe_Q1e-172484161Myocyte-specific enhancer factor 2B
1tqe_R1e-172484161Myocyte-specific enhancer factor 2B
1tqe_S1e-172484161Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445812.12e-52hypothetical protein SORBIDRAFT_07g026180
TrEMBLA0A0E0LX992e-55A0A0E0LX99_ORYPU; Uncharacterized protein
STRINGSb07g026180.15e-52(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.14e-27AGAMOUS-like 14